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Sandrine Dudoit
Associate Professor of Biostatistics
Faculty / personal URL

Phone 510-643-1108
Fax 510-643-5163

	School of Public Health 140 Warren Hall UC Berkeley Berkeley, California 94720-7360

Areas of research interest
biological sequence analysis, biostatistics, classification, cross-validation, density estimation, genetic mapping, genomics, loss-based estimation, microarray, multiple hypothesis testing, prediction, statistical computing, statistics, variable selection

Description
Professor Dudoit's research and teaching activities concern the development and application of statistical and computational methods for the analysis of biomedical and genomic data.

Specific areas of interest include: the design and analysis of high-throughput gene expression experiments using microarrays (e.g., microarray experiments monitoring transcript levels, ChIP-Chip experiments for identifying transcription factor binding sites, alternative splicing microarray experiments); nucleotide and protein sequence analysis (e.g., identification of regulatory motifs in DNA sequences); the genetic mapping of complex human traits (e.g., linkage analysis, linkage disequilibrium analysis, SNP-based association studies); the analysis of biological annotation metadata (e.g., Gene Ontology (GO) annotation).

Her methodological research interests include: loss-based estimation with cross-validation (e.g., prediction, density estimation, variable selection); multiple hypothesis testing.

Professor Dudoit is also involved in the development of statistical software for biomedical and genomic data analysis and is a core member of the Bioconductor Projectwww.bioconductor.org site.

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